Publications (79) José Manuel González Hernández publications View referenced research data.

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2025

  1. The Photoheterotroph Dokdonia sp. MED134 Modulates the Expression of Resource Acquisition and Anaplerotic Carbon Fixation Pathways in Response to Temperature

    Environmental Microbiology, Vol. 27, Núm. 3

2024

  1. Quantifying microbial guilds

    ISME COMMUNICATIONS, Vol. 4, Núm. 1

2023

  1. A ubiquitous gammaproteobacterial clade dominates expression of sulfur oxidation genes across the mesopelagic ocean

    Nature Microbiology, Vol. 8, Núm. 6, pp. 1137-1148

  2. Pynteny: a Python package to perform synteny-aware,profile HMM-based searches in sequence databases

    Journal of Open Source Software, Vol. 8, Núm. 83, pp. 5289

  3. Transcriptional Mechanisms of Thermal Acclimation in Prochlorococcus

    mBio, Vol. 14, Núm. 3, pp. e0342522

2022

  1. Phylogenetically and functionally diverse microorganisms reside under the Ross Ice Shelf

    Nature Communications, Vol. 13, Núm. 1

  2. Rapid bacterioplankton transcription cascades regulate organic matter utilization during phytoplankton bloom progression in a coastal upwelling system

    ISME Journal, Vol. 16, Núm. 10, pp. 2360-2372

  3. Spatial and diel patterns of volatile organic compounds, DMSP-derived compounds, and planktonic microorganisms around a tropical scleractinian coral colony

    Frontiers in Marine Science, Vol. 9

2021

  1. Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities

    Communications Biology, Vol. 4, Núm. 1

  2. Reduction of alternative electron acceptors drives biofilm formation in Shewanella algae

    npj Biofilms and Microbiomes, Vol. 7, Núm. 1

  3. Taxon-Specific Shifts in Bacterial and Archaeal Transcription of Dissolved Organic Matter Cycling Genes in a Stratified Fjord

    mSystems, Vol. 6, Núm. 6

2020

  1. Ecological and functional capabilities of an uncultured Kordia sp.

    Systematic and Applied Microbiology, Vol. 43, Núm. 1

  2. Evolutionary history of dimethylsulfoniopropionate (DMSP) demethylation enzyme DmdA in marine bacteria

    PeerJ, Vol. 8

  3. Light supports cell-integrity and growth rates of taxonomically diverse coastal photoheterotrophs

    Environmental Microbiology, Vol. 22, Núm. 9, pp. 3823-3837

  4. Transcriptional Patterns of Biogeochemically Relevant Marker Genes by Temperate Marine Bacteria

    Frontiers in Microbiology, Vol. 11

2019

  1. Functional annotation of orthologs in metagenomes: a case study of genes for the transformation of oceanic dimethylsulfoniopropionate

    ISME Journal, Vol. 13, Núm. 5, pp. 1183-1197

  2. Repeated evolutionary transitions of flavobacteria from marine to non-marine habitats

    Environmental Microbiology, Vol. 21, Núm. 2, pp. 648-666

2017

  1. Comparative proteomics reveals signature metabolisms of exponentially growing and stationary phase marine bacteria

    Environmental Microbiology, Vol. 19, Núm. 6, pp. 2301-2319

  2. Diversity and distribution of freshwater aerobic anoxygenic phototrophic bacteria across a wide latitudinal gradient

    Frontiers in Microbiology, Vol. 8, Núm. FEB

  3. Exploring microdiversity in novel Kordia sp. (Bacteroidetes) with proteorhodopsin from the tropical Indian Ocean via Single Amplified Genomes

    Frontiers in Microbiology, Vol. 8, Núm. JUL